STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB75990.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (107 aa)    
Predicted Functional Partners:
rlmH
Putative rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.849
KXB75989.1
Putative phosphoglucomutase; KEGG: pdn:HMPREF9137_2410 2.2e-266 pgcA; phosphoglucomutase; Psort location: Cytoplasmic, score: 8.96.
       0.684
KXB81383.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.86.
  
     0.450
KXB82141.1
TonB-dependent receptor plug domain protein; Psort location: OuterMembrane, score: 9.49.
  
     0.442
KXB82143.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.409
KXB74402.1
Hypothetical protein; KEGG: afd:Alfi_3036 4.3e-34 G:T/U mismatch-specific DNA glycosylase; Psort location: Cytoplasmic, score: 8.96.
 
     0.402
KXB82144.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.