STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB75998.1Zinc ribbon domain protein; KEGG: rba:RB6605 7.0e-13 phospholipase C-beta-2; Psort location: Cytoplasmic, score: 8.96. (274 aa)    
Predicted Functional Partners:
KXB75997.1
Dinuclear metal center protein, YbgI family; KEGG: hip:CGSHiEE_02770 1.9e-07 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.914
KXB78962.1
Outer membrane protein assembly complex, YaeT protein; KEGG: apb:SAR116_0511 3.2e-18 surface antigen D15 K07277; Psort location: OuterMembrane, score: 10.00.
  
     0.683
KXB80431.1
Signal peptidase I; KEGG: pdn:HMPREF9137_0606 7.2e-222 lepB; signal peptidase I K03100; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the peptidase S26 family.
  
     0.666
KXB74153.1
Permease, YjgP/YjgQ family; KEGG: hiq:CGSHiGG_02270 0.0013 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K07091; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.653
KXB79622.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.651
KXB80396.1
KEGG: enl:A3UG_20300 9.3e-55 RNA polymerase factor sigma-54; Psort location: Cytoplasmic, score: 9.97.
  
 
 
 0.628
KXB74119.1
Hypothetical protein.
 
     0.598
KXB80146.1
Hypothetical protein.
 
     0.566
KXB80145.1
Outer membrane assembly lipoprotein YfiO.
  
    0.556
lspA
Signal peptidase II family protein; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
     0.547
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.