Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB75664.1Peptidase M16 inactive domain protein; KEGG: bfg:BF638R_3469 1.6e-162 putative peptidase; K07263 zinc protease; Belongs to the peptidase M16 family. (936 aa)    
Predicted Functional Partners:
KXB78018.1
Respiratory-chain NADH dehydrogenase, subunit; KEGG: pdn:HMPREF9137_1116 8.1e-246 hypothetical protein; K13378 NADH-quinone oxidoreductase subunit C/D; Psort location: Cytoplasmic, score: 9.12.
   
 
 0.965
KXB75665.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.820
KXB75663.1
Hypothetical protein.
       0.791
atpH
ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
   
 0.787
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
 0.786
KXB75666.1
SusD family protein; Psort location: Cytoplasmic, score: 8.96.
       0.759
KXB75667.1
TonB-dependent receptor; Psort location: OuterMembrane, score: 9.49.
  
    0.755
KXB81736.1
KEGG: pdn:HMPREF9137_0600 0. sdhA; succinate dehydrogenase flavoprotein subunit K00239; Psort location: CytoplasmicMembrane, score: 7.88.
   
 
 0.717
KXB81737.1
KEGG: pdn:HMPREF9137_0601 6.3e-120 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.715
KXB78030.1
Pyruvate synthase; KEGG: pdn:HMPREF9137_1524 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
  
   0.672
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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