STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB75683.1Putative tyrosine recombinase XerC; KEGG: bsr:I33_1800 2.7e-39 xerC; ATP-dependent protease HslV K03733; Psort location: Cytoplasmic, score: 9.97; Belongs to the 'phage' integrase family. (290 aa)    
Predicted Functional Partners:
KXB75682.1
Ribosomal subunit interface protein.
 
    0.953
rpsU
Ribosomal protein S21; KEGG: smh:DMIN_01740 3.6e-08 30S ribosomal protein S21/signal peptidase I K03100; Belongs to the bacterial ribosomal protein bS21 family.
       0.721
KXB76922.1
Site-specific recombinase, phage integrase family; KEGG: bsr:I33_1800 2.4e-08 xerC; ATP-dependent protease HslV K03733; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family.
  
     0.579
KXB75318.1
Hypothetical protein; KEGG: apb:SAR116_1915 1.9e-05 tyrosine recombinase XerD K04763.
  
     0.551
KXB75685.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.530
KXB78222.1
Site-specific recombinase, phage integrase family; KEGG: bsr:I33_1800 4.1e-09 xerC; ATP-dependent protease HslV K03733; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family.
  
     0.510
KXB76624.1
Site-specific recombinase, phage integrase family; KEGG: pfe:PSF113_1062 1.6e-05 xerD; XerD protein K04763; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family.
  
     0.487
KXB78030.1
Pyruvate synthase; KEGG: pdn:HMPREF9137_1524 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
    
  0.465
KXB75686.1
Hypothetical protein.
       0.461
KXB80596.1
Putative stage III sporulation protein E; KEGG: apb:SAR116_1808 5.5e-89 DNA segregation ATPase FtsK/SpoIIIE K03466; Psort location: CytoplasmicMembrane, score: 10.00.
  
   
 0.456
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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