Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KXB75695.1OmpA family protein; KEGG: apb:SAR116_2281 1.8e-16 flagellar motor protein K02557; Psort location: CytoplasmicMembrane, score: 9.82. (286 aa)    
Predicted Functional Partners:
KXB78292.1
Tetratricopeptide repeat protein; KEGG: apb:SAR116_1534 1.5e-05 hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
 
 
 0.731
KXB79144.1
Hypothetical protein.
   
   0.679
KXB78564.1
Preprotein translocase, YajC subunit; KEGG: apb:SAR116_0407 3.3e-11 YajC K03210; Psort location: CytoplasmicMembrane, score: 9.82.
    
 
 0.659
KXB80088.1
OmpA family protein; KEGG: hhy:Halhy_4875 0.00037 OmpA/MotB domain-containing protein; K02275 cytochrome c oxidase subunit II; Psort location: OuterMembrane, score: 10.00.
  
 
 0.656
KXB78436.1
Putative serine protease MucD; KEGG: pdn:HMPREF9137_1111 7.3e-213 peptidase Do; Psort location: Periplasmic, score: 10.00.
   
   0.645
KXB81943.1
Tetratricopeptide repeat domain protein; KEGG: ccm:Ccan_18230 2.0e-91 PIF1/RRM3 DNA helicase-like protein; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.643
KXB78123.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
   
   0.638
KXB78767.1
Hypothetical protein; KEGG: fnu:FN1512 3.1e-05 phophatidylinositol-4-phosphate 5-kinase.
    
   0.635
KXB78743.1
OmpA family protein; Psort location: OuterMembrane, score: 9.93.
  
 
 0.613
KXB79150.1
Putative GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
   0.566
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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