STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB75716.1Hydrolase, NUDIX family; KEGG: pmz:HMPREF0659_A5133 9.3e-55 mutator MutT protein; Psort location: Cytoplasmic, score: 8.96. (176 aa)    
Predicted Functional Partners:
KXB77494.1
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 1.3e-17 fadD; long-chain-fatty-acid--CoA ligase K03743; Psort location: Cytoplasmic, score: 8.96; Belongs to the CinA family.
    
 0.604
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.592
KXB75715.1
Hypothetical protein.
       0.572
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.566
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.557
KXB75996.1
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.
 
  
 0.551
KXB80391.1
Peptidase C1-like family protein; KEGG: cpi:Cpin_0714 2.7e-41 peptidase C1B bleomycin hydrolase; K01372 bleomycin hydrolase; Psort location: Cytoplasmic, score: 8.96.
    
   0.525
KXB79134.1
KEGG: pru:PRU_0556 3.4e-160 C1 family peptidase; Belongs to the peptidase C1 family.
    
   0.525
KXB78741.1
KEGG: pmz:HMPREF0659_A6065 2.6e-185 putative aminopeptidase E; K01372 bleomycin hydrolase; Belongs to the peptidase C1 family.
    
   0.525
KXB78437.1
KEGG: pru:PRU_0556 3.3e-121 C1 family peptidase; Belongs to the peptidase C1 family.
    
   0.525
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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