Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB75579.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (204 aa)    
Predicted Functional Partners:
KXB75578.1
KEGG: pdn:HMPREF9137_1758 8.3e-173 saccharopine dehydrogenase; Psort location: Cytoplasmic, score: 8.96.
       0.756
KXB75632.1
Hypothetical protein; KEGG: pmz:HMPREF0659_A5557 9.2e-32 lys1; saccharopine dehydrogenase K00290.
       0.546
KXB75580.1
Transcriptional regulator, GntR family; KEGG: ppo:PPM_0985 1.1e-10 ytrA; histidine utilization repressor; Psort location: Cytoplasmic, score: 8.96.
       0.516
KXB75581.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.431
KXB75582.1
Hypothetical protein.
       0.414
KXB75583.1
Hypothetical protein.
       0.409
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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