STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB75164.1ABC transporter, ATP-binding protein; KEGG: bsa:Bacsa_3063 1.5e-86 Phosphonate-transporting ATPase K02065; Psort location: CytoplasmicMembrane, score: 7.88. (259 aa)    
Predicted Functional Partners:
KXB75163.1
Hypothetical protein; KEGG: apb:SAR116_0647 5.1e-22 organic solvents resistance ABC transporter K02066; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.998
KXB79144.1
Hypothetical protein.
 
 0.970
KXB75162.1
KEGG: pdn:HMPREF9137_0266 3.9e-127 ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein; Psort location: Cytoplasmic, score: 9.12.
 
   
0.709
cysS
cysteine--tRNA ligase; KEGG: pmz:HMPREF0659_A6358 2.3e-239 cysS; cysteine--tRNA ligase K01883; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.617
lolD
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
  
 
0.522
KXB81583.1
KEGG: bqy:MUS_0693 2.3e-28 nodI1; Nod factor export ATP-binding protein I K09687; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
0.507
nuoA
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.
   
    0.504
KXB78992.1
Polyprenyl synthetase; KEGG: pdn:HMPREF9137_2101 1.5e-118 polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.495
rpsI
Ribosomal protein S9; KEGG: apb:SAR116_0492 2.4e-24 30S ribosomal protein S9 K02996; Psort location: Cytoplasmic, score: 9.26; Belongs to the universal ribosomal protein uS9 family.
  
     0.474
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.473
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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