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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB75140.1KEGG: shn:Shewana3_3590 4.0e-15 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.26. (141 aa)    
Predicted Functional Partners:
KXB80120.1
KEGG: pmz:HMPREF0659_A5447 0. putative DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha; Psort location: Cytoplasmic, score: 9.97.
   
 0.867
KXB75143.1
Protein, SNF2 family; KEGG: ath:AT1G48310 2.4e-47 CHR18; chromatin remodeling factor18; K14440 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1; Psort location: Cytoplasmic, score: 8.96.
   
   0.785
KXB75138.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.784
KXB75141.1
Hypothetical protein.
       0.776
KXB75139.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.775
KXB75144.1
VRR-NUC domain protein.
       0.774
KXB75142.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
KXB75145.1
Hypothetical protein.
       0.773
priA
Primosomal protein; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
    
 
 0.719
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
  
 0.709
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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