KXB74852.1 protein (Prevotella amnii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KXB74852.1

Conjugative transposon TraK protein. (207 aa)

Predicted Functional Partners:

KXB74851.1

0.918

KXB74849.1

0.897

KXB74850.1

0.890

KXB74847.1

0.872

KXB74848.1

0.867

KXB74854.1

0.862

KXB74855.1

0.858

KXB76642.1

0.823

KXB77283.1

0.822

KXB76561.1

0.822

Your Current Organism:

Prevotella amnii

NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXB74847.1	KXB74848.1	HMPREF1860_01955	HMPREF1860_01956	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	0.949
KXB74847.1	KXB74849.1	HMPREF1860_01955	HMPREF1860_01957	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugation system ATPase, TraG family; Psort location: Cytoplasmic, score: 9.12.	0.944
KXB74847.1	KXB74850.1	HMPREF1860_01955	HMPREF1860_01958	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon protein TraI.	0.922
KXB74847.1	KXB74851.1	HMPREF1860_01955	HMPREF1860_01959	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.895
KXB74847.1	KXB74852.1	HMPREF1860_01955	HMPREF1860_01960	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon TraK protein.	0.872
KXB74847.1	KXB74854.1	HMPREF1860_01955	HMPREF1860_01962	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon TraM protein; KEGG: hie:R2846_1321 3.0e-05 iga; Immunoglobulin A1 protease.	0.730
KXB74847.1	KXB74855.1	HMPREF1860_01955	HMPREF1860_01963	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugative transposon TraN protein.	0.822
KXB74847.1	KXB76561.1	HMPREF1860_01955	HMPREF1860_01572	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugation system ATPase, TraG family; Psort location: Cytoplasmic, score: 9.12.	0.763
KXB74847.1	KXB76642.1	HMPREF1860_01955	HMPREF1860_01571	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein.	0.778
KXB74847.1	KXB77283.1	HMPREF1860_01955	HMPREF1860_01453	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	Conjugation system ATPase, TraG family; Psort location: Cytoplasmic, score: 9.12.	0.764
KXB74848.1	KXB74847.1	HMPREF1860_01956	HMPREF1860_01955	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon protein TraE; Psort location: CytoplasmicMembrane, score: 10.00.	0.949
KXB74848.1	KXB74849.1	HMPREF1860_01956	HMPREF1860_01957	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugation system ATPase, TraG family; Psort location: Cytoplasmic, score: 9.12.	0.922
KXB74848.1	KXB74850.1	HMPREF1860_01956	HMPREF1860_01958	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon protein TraI.	0.923
KXB74848.1	KXB74851.1	HMPREF1860_01956	HMPREF1860_01959	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.888
KXB74848.1	KXB74852.1	HMPREF1860_01956	HMPREF1860_01960	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraK protein.	0.867
KXB74848.1	KXB74854.1	HMPREF1860_01956	HMPREF1860_01962	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraM protein; KEGG: hie:R2846_1321 3.0e-05 iga; Immunoglobulin A1 protease.	0.821
KXB74848.1	KXB74855.1	HMPREF1860_01956	HMPREF1860_01963	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugative transposon TraN protein.	0.825
KXB74848.1	KXB76561.1	HMPREF1860_01956	HMPREF1860_01572	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugation system ATPase, TraG family; Psort location: Cytoplasmic, score: 9.12.	0.665
KXB74848.1	KXB76642.1	HMPREF1860_01956	HMPREF1860_01571	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Hypothetical protein.	0.721
KXB74848.1	KXB77283.1	HMPREF1860_01956	HMPREF1860_01453	Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.	Conjugation system ATPase, TraG family; Psort location: Cytoplasmic, score: 9.12.	0.615