STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB74326.1YigZ family protein; KEGG: spz:M5005_Spy_1328 2.5e-22 Xaa-Pro dipeptidase K01271; Psort location: Cytoplasmic, score: 9.97. (197 aa)    
Predicted Functional Partners:
KXB74325.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.789
KXB74324.1
D-phosphoglycerate dehydrogenase; KEGG: pit:PIN17_A1251 6.5e-125 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain protein; K00058 D-3-phosphoglycerate dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
       0.643
serC
Putative phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
       0.577
KXB74322.1
KEGG: phe:Phep_1011 6.7e-84 DEAD/DEAH box helicase; K05591 ATP-independent RNA helicase DbpA; Psort location: Cytoplasmic, score: 9.97.
   
   0.546
KXB79948.1
NOL1/NOP2/sun family protein; KEGG: lbh:Lbuc_1064 1.4e-44 RNA methylase; Psort location: Cytoplasmic, score: 9.26.
   
  
 0.417
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
   0.408
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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