Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB74104.1Hypothetical protein. (77 aa)    
Predicted Functional Partners:
KXB74103.1
Hypothetical protein.
       0.773
KXB74105.1
DNA-binding helix-turn-helix protein; KEGG: cly:Celly_2903 7.6e-06 phage repressor like transcriptional regulator, XRE family; K01356 repressor LexA.
       0.773
KXB74102.1
Toxin-antitoxin system, toxin component, Fic domain protein; KEGG: pdn:HMPREF9137_0457 1.6e-27 purC_2; phosphoribosylaminoimidazole succinocarboxamide synthase.
       0.497
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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