STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB74106.1KEGG: pdn:HMPREF9137_0198 5.9e-250 S1 RNA binding domain-containing protein; K08301 ribonuclease G; Psort location: Cytoplasmic, score: 9.97. (523 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.904
eno
Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
 
 0.837
KXB74161.1
KEGG: nmh:NMBH4476_0274 4.2e-12 phosphotransferase family protein K07102; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.760
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.750
KXB77437.1
KEGG: pdn:HMPREF9137_0656 1.9e-262 putative cold-shock DEAD-box protein A; K05592 ATP-dependent RNA helicase DeaD; Psort location: Cytoplasmic, score: 9.97.
    
 
 0.714
KXB74322.1
KEGG: phe:Phep_1011 6.7e-84 DEAD/DEAH box helicase; K05591 ATP-independent RNA helicase DbpA; Psort location: Cytoplasmic, score: 9.97.
    
 
 0.714
KXB74109.1
KEGG: cpy:Cphy_2001 1.7e-78 DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE; Psort location: Cytoplasmic, score: 9.97.
    
 
 0.714
KXB74107.1
DNA-binding protein HU; KEGG: apb:SAR116_0125 1.5e-08 histone family protein DNA-binding protein K03530; Belongs to the bacterial histone-like protein family.
     
 0.640
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
  
 0.562
KXB74229.1
HDIG domain protein; KEGG: bsa:Bacsa_2724 2.2e-179 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; Psort location: Cytoplasmic, score: 9.97; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
 
 
 0.533
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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