Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB74123.1Peptidase, M23 family; KEGG: zga:zobellia_3141 1.1e-53 metallopeptidase. (545 aa)    
Predicted Functional Partners:
KXB74119.1
Hypothetical protein.
 
    0.837
KXB74121.1
Hypothetical protein.
 
     0.814
lspA
Signal peptidase II family protein; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
     
 0.800
KXB74122.1
Hypothetical protein.
       0.773
KXB74124.1
Peptidase, C69 family; KEGG: vfu:vfu_B00471 2.0e-25 dipeptidase; K08659 dipeptidase; Psort location: Periplasmic, score: 9.84.
       0.753
KXB78296.1
LysM domain protein; KEGG: ccm:Ccan_15880 1.3e-20 putative lysozyme.
 
  
 0.649
ileS
isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.
     
 0.648
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.642
KXB74190.1
Hypothetical protein; KEGG: pmz:HMPREF0659_A5471 9.1e-183 tpiA; triose-phosphate isomerase; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.557
KXB75539.1
Hypothetical protein.
  
     0.481
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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