STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB74153.1Permease, YjgP/YjgQ family; KEGG: hiq:CGSHiGG_02270 0.0013 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K07091; Psort location: CytoplasmicMembrane, score: 10.00. (633 aa)    
Predicted Functional Partners:
KXB75162.1
KEGG: pdn:HMPREF9137_0266 3.9e-127 ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein; Psort location: Cytoplasmic, score: 9.12.
 
 
 0.952
KXB74110.1
Permease, YjgP/YjgQ family; KEGG: hip:CGSHiEE_03515 3.9e-10 leucyl aminopeptidase K11720; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
  0.909
KXB79622.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
 
 
 0.852
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.799
KXB79960.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.739
KXB78962.1
Outer membrane protein assembly complex, YaeT protein; KEGG: apb:SAR116_0511 3.2e-18 surface antigen D15 K07277; Psort location: OuterMembrane, score: 10.00.
 
     0.737
KXB80145.1
Outer membrane assembly lipoprotein YfiO.
  
   
 0.724
KXB80389.1
Hypothetical protein.
 
     0.723
KXB74293.1
Outer membrane protein, OMP85 family.
 
     0.684
KXB75998.1
Zinc ribbon domain protein; KEGG: rba:RB6605 7.0e-13 phospholipase C-beta-2; Psort location: Cytoplasmic, score: 8.96.
  
     0.653
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.