Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB74160.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (321 aa)    
Predicted Functional Partners:
KXB80145.1
Outer membrane assembly lipoprotein YfiO.
   
 
 0.777
KXB80152.1
Outer membrane protein, OMP85 family.
  
 
 0.682
KXB78962.1
Outer membrane protein assembly complex, YaeT protein; KEGG: apb:SAR116_0511 3.2e-18 surface antigen D15 K07277; Psort location: OuterMembrane, score: 10.00.
  
 
 0.682
KXB74293.1
Outer membrane protein, OMP85 family.
  
 
 0.682
KXB74159.1
Phosphate-selective porin O and P.
       0.682
KXB74186.1
Hypothetical protein.
    
   0.648
KXB79013.1
Hypothetical protein.
    
   0.634
KXB81407.1
KEGG: pmz:HMPREF0659_A5085 2.0e-82 peptidyl-prolyl cis-trans isomerase, FKBP-type K03773; Psort location: Cytoplasmic, score: 9.26.
    
   0.629
KXB81408.1
KEGG: pru:PRU_2861 6.0e-67 mip; peptidyl-prolyl cis-trans isomerase Mip; Psort location: Cytoplasmic, score: 9.26.
    
   0.629
KXB81409.1
KEGG: pmz:HMPREF0659_A5083 3.5e-78 putative Outer membrane protein MIP; K03773 FKBP-type peptidyl-prolyl cis-trans isomerase FklB; Psort location: OuterMembrane, score: 9.92.
    
   0.629
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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