STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmIS-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (231 aa)    
Predicted Functional Partners:
KXB74166.1
Hypothetical protein; KEGG: tva:TVAG_387410 1.2e-06 viral A-type inclusion protein; K02331 DNA polymerase phi subunit.
       0.789
KXB78030.1
Pyruvate synthase; KEGG: pdn:HMPREF9137_1524 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
   
   0.711
tdk
Thymidine kinase; KEGG: pit:PIN17_A1240 7.7e-83 tdk; thymidine kinase K00857; Psort location: Cytoplasmic, score: 9.97.
       0.685
KXB74163.1
Hypothetical protein; KEGG: cfu:CFU_3842 2.4e-31 perM; putative permease; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.670
KXB79948.1
NOL1/NOP2/sun family protein; KEGG: lbh:Lbuc_1064 1.4e-44 RNA methylase; Psort location: Cytoplasmic, score: 9.26.
     
 0.511
KXB78081.1
O-methyltransferase; KEGG: vsa:VSAL_I2107 3.3e-82 O-methyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.505
KXB74113.1
Methyltransferase domain protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC).
  
  
 0.505
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.458
KXB77772.1
KEGG: pdn:HMPREF9137_0543 0. 2-oxoacid:acceptor oxidoreductase subunit alpha; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Psort location: Cytoplasmic, score: 8.96.
   
   0.433
KXB78282.1
RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
 
   
 0.415
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.