STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB74229.1HDIG domain protein; KEGG: bsa:Bacsa_2724 2.2e-179 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; Psort location: Cytoplasmic, score: 9.97; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (474 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.761
KXB80432.1
Dihydrodipicolinate reductase; KEGG: pdn:HMPREF9137_0605 5.5e-112 dapB; dihydrodipicolinate reductase K00215; Psort location: Cytoplasmic, score: 9.97; Belongs to the DapB family.
  
    0.724
eno
Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
  
   0.696
KXB74228.1
Efflux transporter, RND family, MFP subunit; KEGG: agr:AGROH133_15208 5.6e-15 transmembrane efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.644
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
 
 0.598
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 0.595
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
    
 0.593
KXB81365.1
Hypothetical protein.
  
     0.590
KXB74106.1
KEGG: pdn:HMPREF9137_0198 5.9e-250 S1 RNA binding domain-containing protein; K08301 ribonuclease G; Psort location: Cytoplasmic, score: 9.97.
 
 
 
 0.533
KXB81394.1
KEGG: pit:PIN17_A0657 5.5e-105 ribD; riboflavin biosynthesis protein RibD K11752; Psort location: Cytoplasmic, score: 9.97.
  
    0.530
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
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