STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB74274.1AMP-binding enzyme; KEGG: pdn:HMPREF9137_1307 2.1e-247 AMP-binding protein; K01897 long-chain acyl-CoA synthetase; Psort location: CytoplasmicMembrane, score: 7.88. (553 aa)    
Predicted Functional Partners:
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.784
KXB75592.1
AMP-binding enzyme; KEGG: pdn:HMPREF9137_0351 1.9e-253 AMP-binding protein; K01897 long-chain acyl-CoA synthetase; Psort location: Cytoplasmic, score: 9.97.
  
  
 
0.736
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.692
rplR
Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
    
 
 0.689
KXB79010.1
KEGG: pru:PRU_2034 8.8e-240 acyl-CoA dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
  
 0.678
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
 
 
 0.578
KXB78099.1
AMP-binding enzyme; KEGG: gct:GC56T3_2026 3.3e-33 AMP-dependent synthetase and ligase; K12508 feruloyl-CoA synthase; Psort location: Cytoplasmic, score: 9.97.
 
 
0.514
KXB75999.1
KEGG: bsa:Bacsa_2689 5.7e-55 Enoyl-CoA hydratase.
  
 
 0.495
KXB82129.1
KEGG: pmz:HMPREF0659_A6909 3.4e-128 fabD; [acyl-carrier-protein] S-malonyltransferase K00645; Psort location: Cytoplasmic, score: 9.26.
 
  
 0.484
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
   0.471
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 419005
Other names: CCUG 53648, DSM 23384, JCM 14753, P. amnii, Prevotella amnii Lawson et al. 2008 emend. Hahnke et al. 2016
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.