STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ75883.1TipAS antibiotic-recognition domain protein; KEGG: syt:SYNGTI_2739 1.3e-10 corR; cobalt-dependent transcriptional regulator; K06042 precorrin-8X methylmutase; Psort location: Cytoplasmic, score: 7.50. (264 aa)    
Predicted Functional Partners:
KWZ75696.1
DnaJ domain protein; KEGG: apb:SAR116_1614 9.0e-41 DnaJ family molecular chaperone K03686; Psort location: Cytoplasmic, score: 9.97.
  
   0.648
dnaJ
Putative chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions betwee [...]
  
   0.648
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.588
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.577
KWZ74045.1
KEGG: bbc:BLC1_0390 1.9e-125 DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha; Psort location: Cytoplasmic, score: 9.97.
    
   0.577
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.577
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.577
KWZ74557.1
Glutamine synthetase, type I; KEGG: blb:BBMN68_827 8.2e-221 glnA2; glna2; K01915 glutamine synthetase; Psort location: Cytoplasmic, score: 9.67.
  
   0.536
KWZ73777.1
KEGG: bad:BAD_1123 3.3e-217 glnA2; glutamine synthetase; K01915 glutamine synthetase; Psort location: Cytoplasmic, score: 9.97.
  
   0.536
KWZ72834.1
KEGG: blk:BLNIAS_02588 2.6e-105 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.
   
  0.495
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.