STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ75904.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (311 aa)    
Predicted Functional Partners:
KWZ73648.1
Putative exodeoxyribonuclease III; KEGG: bad:BAD_1058 8.8e-114 exodeoxyribonuclease; K01142 exodeoxyribonuclease III; Psort location: Cytoplasmic, score: 9.97.
    
 0.893
KWZ75903.1
ROK family protein; KEGG: bbv:HMPREF9228_0172 2.2e-85 ROK family protein; K00845 glucokinase; Psort location: Cytoplasmic, score: 9.97.
       0.837
KWZ75901.1
BNR/Asp-box repeat protein; KEGG: bln:Blon_0646 2.7e-190 glycosyl hydrolase family protein; K01186 sialidase-1; Psort location: Extracellular, score: 8.42.
 
   
 0.829
KWZ75905.1
Transcriptional regulator, GntR family; KEGG: ecf:ECH74115_0120 6.1e-08 pdhR; transcriptional regulator PdhR K05799; Psort location: Cytoplasmic, score: 7.50.
 
     0.793
nanE
Putative N-acetylmannosamine-6-P epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
     0.729
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
  
 
 0.684
KWZ73361.1
Actinobacterial surface-anchored protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.679
ung
Putative uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
   
 
 0.590
cmk
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily.
 
    0.516
KWZ73781.1
Transporter, major facilitator family protein; KEGG: rcp:RCAP_rcc03385 3.4e-14 emrB; multidrug resistance protein B K03446; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.495
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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