STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ75720.1RNA methyltransferase, TrmH family; KEGG: bnm:BALAC2494_01263 1.3e-71 Methyltransferase; Psort location: Cytoplasmic, score: 7.50. (232 aa)    
Predicted Functional Partners:
KWZ75719.1
Hypothetical protein; KEGG: bbp:BBPR_1681 6.5e-55 pyrE1; orotate phosphoribosyltransferase PyrE; Psort location: Cytoplasmic, score: 7.50.
  
    0.838
KWZ75718.1
RmuC domain protein; KEGG: hsa:79784 1.2e-05 MYH14, DFNA4, DFNA4A, DKFZp667A1311, FLJ13881, FLJ43092, KIAA2034, MHC16, MYH17, NMHC_II-C, NMHC-II-C, PNMHH, myosin; myosin, heavy chain 14, non-muscle K10352; Psort location: Cytoplasmic, score: 7.50.
       0.826
KWZ75516.1
Mutator mutT protein; KEGG: stj:SALIVA_0738 1.1e-44 nudG; CTP pyrophosphohydrolase; Psort location: Cytoplasmic, score: 7.50; Belongs to the Nudix hydrolase family.
 
  
   0.723
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
   
   0.707
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.696
rplQ
Ribosomal protein L17; KEGG: apb:SAR116_2416 1.7e-21 50S ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 9.67.
  
   0.694
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.688
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
   0.673
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.668
gatA
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
  
   0.662
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.