STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ75730.1KEGG: ami:Amir_1860 6.1e-42 LacI family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97. (365 aa)    
Predicted Functional Partners:
KWZ75729.1
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.820
KWZ75728.1
KEGG: bbc:BLC1_0283 4.1e-45 Signal peptidase I; K03100 signal peptidase I; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the peptidase S26 family.
  
    0.776
KWZ75731.1
Carbohydrate kinase, FGGY family protein; KEGG: bde:BDP_1924 1.2e-210 xylB; xylulokinase; Psort location: Cytoplasmic, score: 7.50.
   
   0.640
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
   0.536
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
    
   0.517
pheT
KEGG: bde:BDP_1298 0. pheT; phenylalanyl-tRNA synthetase subunit beta K01890; Psort location: Cytoplasmic, score: 9.97.
    
   0.517
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
       0.468
KWZ73298.1
Hypothetical protein; KEGG: cai:Caci_3594 2.0e-20 LacI family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97.
  
     0.463
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
    
   0.402
KWZ75716.1
KEGG: afo:Afer_0169 2.8e-37 LacI family transcriptional regulator K02529; Psort location: Cytoplasmic, score: 9.97.
 
    
0.400
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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