STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ75517.1Helicase protein; KEGG: aai:AARI_31700 2.8e-172 ATP-dependent helicase; Psort location: CytoplasmicMembrane, score: 9.55. (964 aa)    
Predicted Functional Partners:
KWZ75516.1
Mutator mutT protein; KEGG: stj:SALIVA_0738 1.1e-44 nudG; CTP pyrophosphohydrolase; Psort location: Cytoplasmic, score: 7.50; Belongs to the Nudix hydrolase family.
 
    0.925
KWZ74045.1
KEGG: bbc:BLC1_0390 1.9e-125 DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha; Psort location: Cytoplasmic, score: 9.97.
    
  0.886
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.882
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.876
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.793
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.606
KWZ75882.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
   
 0.600
KWZ75524.1
KEGG: phe:Phep_3887 1.2e-141 alpha-L-rhamnosidase; K05989 alpha-L-rhamnosidase.
   
   0.550
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
   0.508
KWZ75529.1
KEGG: bde:BDP_0161 1.8e-193 alpha-L-rhamnosidase; K05989 alpha-L-rhamnosidase; Psort location: CytoplasmicMembrane, score: 8.16.
    
   0.483
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.