STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpiARibose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (230 aa)    
Predicted Functional Partners:
KWZ75450.1
KEGG: gva:HMPREF0424_0298 1.6e-254 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.977
KWZ73467.1
Transketolase; KEGG: gva:HMPREF0424_0902 0. tkt; transketolase K00615; Psort location: Cytoplasmic, score: 7.50; Belongs to the transketolase family.
   
 0.976
KWZ75855.1
Phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 
 0.973
KWZ72784.1
KEGG: gvg:HMPREF0421_20299 1.9e-127 gnd; 6-phosphogluconate dehydrogenase K00033; Psort location: Cytoplasmic, score: 7.50.
    
 0.969
KWZ73503.1
KEGG: bad:BAD_0793 5.4e-98 rpe; ribulose-phosphate 3-epimerase K01783; Psort location: Cytoplasmic, score: 7.50.
  
 0.965
rbsK
Putative ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
   
 0.963
KWZ74712.1
KEGG: blk:BLNIAS_01811 2.6e-146 prsA2; ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.947
KWZ72786.1
Putative gluconokinase; KEGG: gvg:HMPREF0421_20297 1.1e-69 aroK; shikimate kinase K00851; Psort location: CytoplasmicMembrane, score: 8.16.
    
 0.910
sucD
succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
 
 
  
 0.726
KWZ75449.1
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.664
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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