STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
truAtRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (318 aa)    
Predicted Functional Partners:
rplQ
Ribosomal protein L17; KEGG: apb:SAR116_2416 1.7e-21 50S ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 9.67.
 
  
 0.992
KWZ74045.1
KEGG: bbc:BLC1_0390 1.9e-125 DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.977
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 
 0.861
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
   0.626
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
   
 
 0.621
KWZ72320.1
Peptidase family M13; KEGG: bbf:BBB_1362 5.9e-227 pepO; neutral endopeptidase; K07386 putative endopeptidase; Psort location: Cytoplasmic, score: 9.97.
 
      0.619
KWZ74569.1
KEGG: bde:BDP_1338 6.7e-123 ABC transporter ATP-binding protein K02006; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.617
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
  
 
 0.610
KWZ72842.1
Metallo-beta-lactamase domain protein; KEGG: vcj:VCD_003081 5.6e-08 hydroxyacylglutathione hydrolase; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.599
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
   0.588
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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