STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ74064.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (409 aa)    
Predicted Functional Partners:
KWZ74067.1
biotin--[acetyl-CoA-carboxylase] ligase; KEGG: tsh:Tsac_1252 7.9e-26 BirA bifunctional protein, biotin operon repressor, biotin/acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase; Psort location: Cytoplasmic, score: 9.97.
     
 0.658
KWZ75110.1
KEGG: bbv:HMPREF9228_0747 3.3e-75 holA; DNA polymerase III subunit delta K02340; Psort location: Cellwall, score: 8.19.
  
     0.654
KWZ74065.1
BioY family protein; KEGG: sgg:SGGBAA2069_c15520 5.8e-14 bioY; putative biotin biosynthesis protein BioY K03523; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.574
KWZ74070.1
MaoC-like protein; KEGG: bad:BAD_0256 0. fas; fatty acid synthase Fas; K11533 fatty acid synthase, bacteria type; Psort location: CytoplasmicMembrane, score: 9.78.
     
 0.561
KWZ75852.1
Putative opcA protein; Psort location: CytoplasmicMembrane, score: 9.55.
  
     0.551
KWZ74602.1
Hypothetical protein; KEGG: bad:BAD_0542 5.6e-135 priA; primosome assembly protein PriA; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase); Psort location: Cytoplasmic, score: 7.50.
  
     0.549
KWZ73471.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.538
KWZ73563.1
DNA-binding helix-turn-helix protein.
  
    0.529
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.511
KWZ74063.1
Hypothetical protein.
       0.507
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.