STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ73779.1Methyltransferase small domain protein; KEGG: bbp:BBPR_0536 1.2e-47 16S RNA methylase. (241 aa)    
Predicted Functional Partners:
KWZ75914.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.649
KWZ73778.1
KEGG: bbi:BBIF_0560 0. hrpA; ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA; Psort location: CytoplasmicMembrane, score: 8.16.
       0.648
valS
Anticodon-binding domain protein; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner.
  
     0.633
obg
Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
   
    0.545
KWZ72806.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.438
KWZ73755.1
Lon protease proteolytic domain protein; KEGG: bbf:BBB_0450 4.1e-68 PDZ/DHR/GLGF domain containing protein K07177; Psort location: CytoplasmicMembrane, score: 9.55.
  
     0.433
rplA
Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
  
    0.424
KWZ75414.1
G5 domain protein; KEGG: bde:BDP_0983 5.0e-28 TraG-like protein.
  
     0.424
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
    0.415
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.