STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mraZProtein MraZ; Psort location: Cytoplasmic, score: 7.50; Belongs to the MraZ family. (188 aa)    
Predicted Functional Partners:
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
 0.997
KWZ73792.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: blo:BL1317 2.4e-143 ftsI; peptidoglycan synthetase; penicillin-binding protein 3 precursor; K03587 cell division protein FtsI (penicillin-binding protein 3); Psort location: CytoplasmicMembrane, score: 9.51.
 
  
 0.740
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 
 0.682
KWZ73791.1
Hypothetical protein.
  
  
 0.642
pheT
KEGG: bde:BDP_1298 0. pheT; phenylalanyl-tRNA synthetase subunit beta K01890; Psort location: Cytoplasmic, score: 9.97.
   
   0.617
KWZ73793.1
Hypothetical protein; KEGG: bla:BLA_0781 1.2e-36 murE; UDP-N-acetylmuramyl-tripeptide synthetases; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.616
KWZ73788.1
Hypothetical protein; KEGG: bbb:BIF_01364 3.3e-233 ATP-dependent DNA helicase rep; Psort location: Cytoplasmic, score: 7.50.
       0.546
murD
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
     
 0.495
KWZ73787.1
Putative phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.494
KWZ73797.1
Cell cycle protein, FtsW/RodA/SpoVE family; KEGG: ase:ACPL_1760 2.1e-41 ftsW; cell division protein FtsW K03588; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the SEDS family.
 
   
 0.472
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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