Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KWZ73566.1 | xerD | HMPREF3214_01340 | HMPREF3214_01085 | FtsK/SpoIIIE family protein; KEGG: eab:ECABU_c09310 1.3e-102 ftsK; cell division protein FtsK K03466; Psort location: CytoplasmicMembrane, score: 10.00. | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.584 |
| KWZ73629.1 | xerD | HMPREF3214_01086 | HMPREF3214_01085 | Hypothetical protein; KEGG: bqy:MUS_4143 9.2e-32 phosphoenolpyruvate carboxylase; Psort location: CytoplasmicMembrane, score: 10.00. | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.554 |
| KWZ73642.1 | KWZ75125.1 | HMPREF3214_01099 | HMPREF3214_00558 | KEGG: bbi:BBIF_0630 8.7e-75 tyrA1; prephenate dehydrogenase; K04517 prephenate dehydrogenase; Psort location: Cytoplasmic, score: 7.50. | KEGG: pgv:SL003B_1176 8.4e-06 apt; adenine phosphoribosyltransferase; K00759 adenine phosphoribosyltransferase; Psort location: Cytoplasmic, score: 7.50. | 0.659 |
| KWZ73642.1 | xerD | HMPREF3214_01099 | HMPREF3214_01085 | KEGG: bbi:BBIF_0630 8.7e-75 tyrA1; prephenate dehydrogenase; K04517 prephenate dehydrogenase; Psort location: Cytoplasmic, score: 7.50. | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.488 |
| KWZ75125.1 | KWZ73642.1 | HMPREF3214_00558 | HMPREF3214_01099 | KEGG: pgv:SL003B_1176 8.4e-06 apt; adenine phosphoribosyltransferase; K00759 adenine phosphoribosyltransferase; Psort location: Cytoplasmic, score: 7.50. | KEGG: bbi:BBIF_0630 8.7e-75 tyrA1; prephenate dehydrogenase; K04517 prephenate dehydrogenase; Psort location: Cytoplasmic, score: 7.50. | 0.659 |
| KWZ75125.1 | xerD | HMPREF3214_00558 | HMPREF3214_01085 | KEGG: pgv:SL003B_1176 8.4e-06 apt; adenine phosphoribosyltransferase; K00759 adenine phosphoribosyltransferase; Psort location: Cytoplasmic, score: 7.50. | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.476 |
| KWZ75216.1 | xerD | HMPREF3214_00528 | HMPREF3214_01085 | KEGG: bad:BAD_0688 3.1e-173 pta; phosphate acetyltransferase; K13788 phosphate acetyltransferase; Psort location: Cytoplasmic, score: 7.50. | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.663 |
| infC | pyrG | HMPREF3214_01082 | HMPREF3214_01175 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.600 |
| infC | rplT | HMPREF3214_01082 | HMPREF3214_01084 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.998 |
| infC | rpmI | HMPREF3214_01082 | HMPREF3214_01083 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.989 |
| infC | xerD | HMPREF3214_01082 | HMPREF3214_01085 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.564 |
| pyrG | infC | HMPREF3214_01175 | HMPREF3214_01082 | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.600 |
| pyrG | rplT | HMPREF3214_01175 | HMPREF3214_01084 | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.539 |
| pyrG | xerD | HMPREF3214_01175 | HMPREF3214_01085 | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.404 |
| rplT | infC | HMPREF3214_01084 | HMPREF3214_01082 | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.998 |
| rplT | pyrG | HMPREF3214_01084 | HMPREF3214_01175 | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.539 |
| rplT | rpmI | HMPREF3214_01084 | HMPREF3214_01083 | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
| rplT | xerD | HMPREF3214_01084 | HMPREF3214_01085 | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.679 |
| rpmI | infC | HMPREF3214_01083 | HMPREF3214_01082 | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.989 |
| rpmI | rplT | HMPREF3214_01083 | HMPREF3214_01084 | Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
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