STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ73639.1KEGG: bbp:BBPR_0603 1.9e-285 typA; GTP-binding protein TypA K06207; Psort location: CytoplasmicMembrane, score: 8.78. (640 aa)    
Predicted Functional Partners:
KWZ73640.1
Hypothetical protein; KEGG: gym:GYMC10_3513 0.00096 cytochrome d ubiquinol oxidase subunit II; K00426 cytochrome d ubiquinol oxidase subunit II; Psort location: CytoplasmicMembrane, score: 10.00.
       0.784
KWZ73641.1
Prephenate dehydratase; KEGG: blb:BBMN68_273 9.8e-83 pheA; phea; K14170 chorismate mutase / prephenate dehydratase; Psort location: Cytoplasmic, score: 9.97.
       0.749
KWZ73642.1
KEGG: bbi:BBIF_0630 8.7e-75 tyrA1; prephenate dehydrogenase; K04517 prephenate dehydrogenase; Psort location: Cytoplasmic, score: 7.50.
       0.749
cmk
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily.
  
  
 0.690
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
  
  
 0.645
rplA
Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
   
    0.643
KWZ73492.1
DEAD/DEAH box helicase; KEGG: bad:BAD_0818 4.4e-270 helicase; K03727 ATP-dependent RNA helicase HelY; Psort location: Cytoplasmic, score: 7.50.
      
 0.604
KWZ73638.1
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
       0.596
KWZ73636.1
Putative sporulation initiation inhibitor protein Soj; KEGG: sen:SACE_5241 3.0e-81 chromosome partitioning protein K03496; Psort location: CytoplasmicMembrane, score: 8.78.
       0.559
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
  
  
 0.545
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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