STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ73648.1Putative exodeoxyribonuclease III; KEGG: bad:BAD_1058 8.8e-114 exodeoxyribonuclease; K01142 exodeoxyribonuclease III; Psort location: Cytoplasmic, score: 9.97. (287 aa)    
Predicted Functional Partners:
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
 
 0.991
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.964
KWZ75961.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.938
KWZ75442.1
KEGG: bde:BDP_1784 5.9e-92 mutY; A/G-specific adenine DNA glycosylase K03575.
    
 0.903
KWZ75904.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
    
 0.893
ung
Putative uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
   
 0.813
KWZ73647.1
Putative phosphonate C-P lyase system protein PhnK; KEGG: bde:BDP_1489 1.4e-243 oppD2; peptide ABC transporter ATP-binding protein K02031:K02032; Psort location: CytoplasmicMembrane, score: 9.96.
       0.798
KWZ74067.1
biotin--[acetyl-CoA-carboxylase] ligase; KEGG: tsh:Tsac_1252 7.9e-26 BirA bifunctional protein, biotin operon repressor, biotin/acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase; Psort location: Cytoplasmic, score: 9.97.
  
    0.773
KWZ73646.1
Putative oligopeptide ABC transporter, permease protein OppC; KEGG: apb:SAR116_0601 5.4e-43 binding-protein-dependent transport system inner membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.
       0.754
KWZ73645.1
Putative oligopeptide transport system permease protein OppB; KEGG: amt:Amet_2908 2.0e-52 nickel-transporting ATPase K02033; Psort location: CytoplasmicMembrane, score: 10.00.
       0.705
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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