STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ73664.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (163 aa)    
Predicted Functional Partners:
KWZ73666.1
SMI1 / KNR4 family protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.769
KWZ75961.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.611
KWZ73663.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.529
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
 
 0.519
KWZ76056.1
Addiction module antitoxin, RelB/DinJ family; Psort location: Cytoplasmic, score: 7.50.
  
     0.489
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
 
 0.464
KWZ74079.1
Hypothetical protein; KEGG: bnm:BALAC2494_01394 1.7e-156 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides; Psort location: CytoplasmicMembrane, score: 9.55.
    
   0.456
KWZ74080.1
UvrD/REP helicase; KEGG: bad:BAD_1305 4.5e-165 ATP-dependent DNA helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: CytoplasmicMembrane, score: 9.55; Belongs to the helicase family. UvrD subfamily.
    
   0.456
KWZ73752.1
UvrD/REP helicase; KEGG: bbp:BBPR_0471 7.0e-105 DNA helicaseII-like protein K03657; Psort location: Cytoplasmic, score: 9.97.
    
   0.456
KWZ73701.1
KEGG: bbp:BBPR_0792 2.7e-293 pcrA; ATP-dependent DNA helicase PcrA K03657; Psort location: Cytoplasmic, score: 9.97.
    
   0.456
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.