STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ73736.1Putative flagellar protein FliS; KEGG: bde:BDP_1047 9.4e-236 long-chain-fatty acid CoA ligase K01897; Psort location: Cytoplasmic, score: 9.67. (676 aa)    
Predicted Functional Partners:
KWZ74070.1
MaoC-like protein; KEGG: bad:BAD_0256 0. fas; fatty acid synthase Fas; K11533 fatty acid synthase, bacteria type; Psort location: CytoplasmicMembrane, score: 9.78.
  
 0.979
KWZ73514.1
AMP-binding enzyme; KEGG: bad:BAD_0779 2.2e-218 fadD3; long-chain-fatty acid CoA ligase; K01897 long-chain acyl-CoA synthetase; Psort location: CytoplasmicMembrane, score: 8.78.
  
  
 
0.942
KWZ75447.1
AMP-binding enzyme; KEGG: bbf:BBB_1004 1.7e-206 fadD; putative long-chain-fatty-acid--CoA ligase K01897; Psort location: Cytoplasmic, score: 9.97.
  
  
 
0.940
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
   0.577
rplR
Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
    
   0.550
KWZ75092.1
Hypothetical protein; KEGG: bbv:HMPREF9228_0906 2.9e-60 peptidase, S9A/B/C family, catalytic domain protein.
  
 
  0.472
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
 
 0.457
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.442
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
   0.420
KWZ74009.1
KEGG: gva:HMPREF0424_0254 0. adh; aldehyde-alcohol dehydrogenase 2 K04072; Psort location: Cytoplasmic, score: 9.97; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
 
 
 0.400
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.