STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ73490.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (675 aa)    
Predicted Functional Partners:
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
   
   0.804
KWZ73491.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.637
KWZ73492.1
DEAD/DEAH box helicase; KEGG: bad:BAD_0818 4.4e-270 helicase; K03727 ATP-dependent RNA helicase HelY; Psort location: Cytoplasmic, score: 7.50.
       0.624
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.577
KWZ74045.1
KEGG: bbc:BLC1_0390 1.9e-125 DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha; Psort location: Cytoplasmic, score: 9.97.
    
   0.577
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.577
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.577
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.577
KWZ74160.1
Hypothetical protein; KEGG: saa:SAUSA300_0042 1.7e-78 hypothetical protein; K03655 ATP-dependent DNA helicase RecG.
  
 
  0.422
KWZ73603.1
Exonuclease; KEGG: gvh:HMPREF9231_0355 1.2e-61 exonuclease; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 7.50.
    
  0.414
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.