Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KWZ73514.1 | def-2 | HMPREF3214_01286 | HMPREF3214_01285 | AMP-binding enzyme; KEGG: bad:BAD_0779 2.2e-218 fadD3; long-chain-fatty acid CoA ligase; K01897 long-chain acyl-CoA synthetase; Psort location: CytoplasmicMembrane, score: 8.78. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.837 |
| KWZ73514.1 | rplR | HMPREF3214_01286 | HMPREF3214_00878 | AMP-binding enzyme; KEGG: bad:BAD_0779 2.2e-218 fadD3; long-chain-fatty acid CoA ligase; K01897 long-chain acyl-CoA synthetase; Psort location: CytoplasmicMembrane, score: 8.78. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.550 |
| KWZ73514.1 | rpsB | HMPREF3214_01286 | HMPREF3214_01284 | AMP-binding enzyme; KEGG: bad:BAD_0779 2.2e-218 fadD3; long-chain-fatty acid CoA ligase; K01897 long-chain acyl-CoA synthetase; Psort location: CytoplasmicMembrane, score: 8.78. | Ribosomal protein S2; KEGG: apb:SAR116_0519 4.3e-57 30S ribosomal protein S2 K02967; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS2 family. | 0.498 |
| def-2 | KWZ73514.1 | HMPREF3214_01285 | HMPREF3214_01286 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | AMP-binding enzyme; KEGG: bad:BAD_0779 2.2e-218 fadD3; long-chain-fatty acid CoA ligase; K01897 long-chain acyl-CoA synthetase; Psort location: CytoplasmicMembrane, score: 8.78. | 0.837 |
| def-2 | fmt | HMPREF3214_01285 | HMPREF3214_00714 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.899 |
| def-2 | rplI | HMPREF3214_01285 | HMPREF3214_01380 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.825 |
| def-2 | rplR | HMPREF3214_01285 | HMPREF3214_00878 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.818 |
| def-2 | rplU | HMPREF3214_01285 | HMPREF3214_00431 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.810 |
| def-2 | rpsB | HMPREF3214_01285 | HMPREF3214_01284 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S2; KEGG: apb:SAR116_0519 4.3e-57 30S ribosomal protein S2 K02967; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS2 family. | 0.889 |
| def-2 | rpsO | HMPREF3214_01285 | HMPREF3214_00807 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.824 |
| def-2 | rpsP | HMPREF3214_01285 | HMPREF3214_01424 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S16; KEGG: apb:SAR116_1817 3.4e-18 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bS16 family. | 0.801 |
| def-2 | rpsT | HMPREF3214_01285 | HMPREF3214_01204 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.815 |
| def-2 | tig | HMPREF3214_01285 | HMPREF3214_01299 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.818 |
| fmt | def-2 | HMPREF3214_00714 | HMPREF3214_01285 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.899 |
| rplI | def-2 | HMPREF3214_01380 | HMPREF3214_01285 | Ribosomal protein L9; Binds to the 23S rRNA. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.825 |
| rplI | rplR | HMPREF3214_01380 | HMPREF3214_00878 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplI | rplU | HMPREF3214_01380 | HMPREF3214_00431 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
| rplI | rpsB | HMPREF3214_01380 | HMPREF3214_01284 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S2; KEGG: apb:SAR116_0519 4.3e-57 30S ribosomal protein S2 K02967; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS2 family. | 0.988 |
| rplI | rpsO | HMPREF3214_01380 | HMPREF3214_00807 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
| rplI | rpsP | HMPREF3214_01380 | HMPREF3214_01424 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S16; KEGG: apb:SAR116_1817 3.4e-18 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
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