STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ72311.1KEGG: gvg:HMPREF0421_20927 1.3e-64 ABC transporter substrate-binding protein; Psort location: Cytoplasmic, score: 7.50; Belongs to the bacterial solute-binding protein 3 family. (347 aa)    
Predicted Functional Partners:
KWZ72310.1
KEGG: pva:Pvag_1909 2.8e-53 ABC transporter permease K02029; Psort location: CytoplasmicMembrane, score: 10.00.
  0.984
KWZ72309.1
KEGG: blt:Balat_0551 2.7e-96 ABC transporter ATP-binding protein; K02028 polar amino acid transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.
  0.955
KWZ75402.1
ABC transporter, permease protein; KEGG: cco:CCC13826_0661 8.8e-50 6,7-dimethyl-8-ribityllumazine synthase K02029; Psort location: CytoplasmicMembrane, score: 10.00.
  0.891
KWZ75362.1
Kinase domain protein; KEGG: blm:BLLJ_0059 1.8e-120 serine-threonine protein kinase; K08884 serine/threonine protein kinase, bacterial; Psort location: CytoplasmicMembrane, score: 8.78.
 
 
    0.886
KWZ73623.1
ABC transporter, permease protein; KEGG: pfe:PSF113_4582 4.1e-20 gltJ; protein GltJ K10003; Psort location: CytoplasmicMembrane, score: 10.00.
  0.833
KWZ74634.1
ABC transporter, permease protein; KEGG: rcm:A1E_00665 5.2e-29 sdhA; succinate dehydrogenase flavoprotein subunit K02029; Psort location: CytoplasmicMembrane, score: 10.00.
  0.811
KWZ73624.1
ABC transporter, permease protein; KEGG: sgg:SGGBAA2069_c14260 3.0e-25 glnH; amino acid ABC transporter amino acid-binding/permease K02029:K02030; Psort location: CytoplasmicMembrane, score: 10.00.
  0.797
KWZ73621.1
KEGG: bbv:HMPREF9228_0523 4.8e-106 gluA_1; glutamate ABC transporter, ATP-binding protein GluA; K10008 glutamate transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.96.
  0.772
KWZ75403.1
KEGG: hpa:HPAG1_1109 2.5e-45 glutamine ABC transporter, permease protein K02029; Psort location: CytoplasmicMembrane, score: 10.00.
  0.770
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.769
Your Current Organism:
Alloscardovia omnicolens
NCBI taxonomy Id: 419015
Other names: A. omnicolens, Alloscardovia omnicolens Huys et al. 2007, CCUG 31649, DSM 21503, LMG 23792, LMG:23792
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.