Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDU42668.1Hypothetical protein. (151 aa)    
Predicted Functional Partners:
SDU42605.1
Hypothetical protein.
       0.817
SDU42619.1
Hypothetical protein.
       0.817
SDU42635.1
Hypothetical protein.
       0.817
SDU42653.1
Hypothetical protein.
       0.817
SDU42704.1
Hypothetical protein.
       0.817
SDU42589.1
Hypothetical protein.
       0.773
SDU42688.1
Hypothetical protein.
       0.773
SDU42573.1
Hypothetical protein.
       0.762
SDU42529.1
Hypothetical protein.
       0.721
SDU42542.1
SAP domain-containing protein.
       0.721
Your Current Organism:
Jiangella alkaliphila
NCBI taxonomy Id: 419479
Other names: DSM 45079, J. alkaliphila, JBRI 2008, JCM 15620, Jiangella alkaliphila Lee 2008, KCTC 19222, strain D8-87
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