STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCX84412.1sigma-B regulation protein RsbU (phosphoserine phosphatase). (324 aa)    
Predicted Functional Partners:
SCX84112.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 0.976
SCX83497.1
PAS domain S-box-containing protein.
 
 0.975
SCX84133.1
Serine/threonine-protein kinase RsbW.
 
 0.972
SCY42927.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 0.939
SCY84777.1
Signal transduction histidine kinase.
 
 0.939
SCY80410.1
Signal transduction histidine kinase.
 
 0.938
SCY80418.1
Putative two-component system response regulator.
 
 
  0.937
SCY63769.1
Response regulator receiver modulated diguanylate cyclase.
 
  0.934
SCY87703.1
PAS domain S-box-containing protein.
 
 0.933
SCY70821.1
PAS domain S-box-containing protein.
 
 
 0.932
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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