STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCX92896.1Cro/C1-type HTH DNA-binding domain-containing protein. (190 aa)    
Predicted Functional Partners:
SCX92880.1
fatty-acyl-CoA synthase.
 
     0.772
SCY55779.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.580
SCY54624.1
Nitronate monooxygenase.
   
 
 0.569
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.559
SCY54637.1
Enoyl-(Acyl carrier protein) reductase.
   
 
 0.550
SCX96904.1
Amino acid adenylation domain-containing protein.
     
 0.490
SCY22313.1
Chorismate mutase / prephenate dehydratase.
  
 
 0.482
SCY35385.1
Phosphate butyryltransferase.
  
 
0.469
SCY61166.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 0.468
SCY50703.1
NAD-dependent deacetylase.
  
    0.459
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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