STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCX96499.1Putative beta-barrel porin 2. (428 aa)    
Predicted Functional Partners:
SCX96485.1
Polysaccharide export outer membrane protein.
    
  0.836
SCX96464.1
Sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
    
  0.817
SCY73754.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
    
  0.668
SCY30367.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
    
 0.658
SCY73821.1
Capsular exopolysaccharide family.
    
 0.658
SCX96519.1
Polysaccharide deacetylase family protein, PEP-CTERM locus subfamily.
       0.616
SCX96420.1
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.
    
 0.540
SCX96441.1
Receptor protein-tyrosine kinase.
    
  0.507
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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