STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY33334.1Twitching motility protein PilT. (355 aa)    
Predicted Functional Partners:
SCY27834.1
Type IV pilus assembly protein PilC.
 
  
 0.793
SCY41267.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.792
SCY82492.1
General secretion pathway protein F.
 
  
 0.792
SCY33348.1
Hypothetical protein.
       0.718
SCY70502.1
Type IV pilus assembly protein PilM.
 
   
 0.692
SCY33317.1
Pilus retraction ATPase PilT.
 
    
0.647
SCY86178.1
Type IV pilus assembly protein PilA.
 
   
 0.625
SCY38975.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 0.537
SCY90237.1
Competence protein ComEC.
     
 0.441
SCY33368.1
8-oxo-dGTP diphosphatase; Belongs to the Nudix hydrolase family.
       0.431
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.