STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY39994.1Two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB. (666 aa)    
Predicted Functional Partners:
SCY39971.1
Two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD.
 0.976
SCY38975.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.936
SCY87703.1
PAS domain S-box-containing protein.
 
0.881
SCY40009.1
ABC-type Fe3+ transport system, substrate-binding protein.
 
  
  0.880
SCX83497.1
PAS domain S-box-containing protein.
 
0.852
SCY28719.1
Response regulator receiver domain-containing protein.
 
 0.842
SCY57686.1
Signal transduction histidine kinase.
 
0.836
SCY58120.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.836
SCY19083.1
Signal transduction histidine kinase.
 
0.824
SCY27376.1
PAS domain S-box-containing protein.
 
0.823
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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