STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY39061.1Type VI secretion system protein ImpC. (651 aa)    
Predicted Functional Partners:
SCY39037.1
Type VI secretion system protein ImpB.
 
 0.998
SCY20642.1
Type VI secretion system protein ImpB.
 
 0.995
SCY20678.1
Type VI secretion system secreted protein Hcp.
 
 0.989
SCY20745.1
Type VI secretion system protein VasG; Belongs to the ClpA/ClpB family.
 0.962
SCY20558.1
Type VI secretion system protein ImpL.
 
 
 0.950
SCY20730.1
Type VI secretion system protein ImpH.
 
 
 0.946
SCY20537.1
Type IV / VI secretion system protein, DotU family.
 
  
 0.926
SCY20512.1
Type VI secretion system protein ImpJ.
 
 
 0.923
SCY39185.1
Type VI secretion system, ImpG, VasA, VC_A0110.
 
  
 0.917
SCY20594.1
Type VI secretion system protein VasJ.
 
 
 0.909
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.