STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY43196.1Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (448 aa)    
Predicted Functional Partners:
SCY04357.1
Uroporphyrinogen III methyltransferase / synthase.
  
 
 0.825
SCX83799.1
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
  
  0.815
SCY65573.1
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
  
  0.815
SCY43215.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
 
 0.794
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.773
SCY90690.1
Protein of unknown function.
 
     0.740
SCX81299.1
Protein of unknown function.
 
     0.738
SCY90697.1
GTPase, G3E family.
 
  
 0.734
SCY90742.1
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
    0.673
SCY43245.1
Trimethylamine:corrinoid methyltransferase; Belongs to the trimethylamine methyltransferase family.
 
  
  0.598
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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