STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY46385.1Hypothetical protein. (150 aa)    
Predicted Functional Partners:
SCY43566.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.732
SCY68053.1
Tfp pilus assembly protein PilF.
     
 0.645
nadE
NAD+ synthase/NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.645
SCY46405.1
Protein of unknown function.
       0.596
SCX79035.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.585
SCY55326.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.585
SCY04179.1
TPR repeat-containing protein.
   
 0.570
SCY40106.1
Tetratricopeptide repeat-containing protein.
   
 0.570
SCY46364.1
Hypothetical protein.
       0.550
SCY35385.1
Phosphate butyryltransferase.
  
 
 0.475
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.