STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY58901.1TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (163 aa)    
Predicted Functional Partners:
SCY58880.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.950
SCY58913.1
TRAP transporter, DctM subunit.
 
     0.905
SCY72594.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
 0.639
SCY81297.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.572
SCY81308.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.548
SCY58852.1
Sensor histidine kinase inhibitor, KipI family.
       0.518
SCY58872.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
       0.516
pxpA
UPF0271 protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.506
SCY32756.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.505
SCY57408.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.485
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.