STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY59067.1Oxygen-independent coproporphyrinogen-3 oxidase. (458 aa)    
Predicted Functional Partners:
SCY59003.1
Hypothetical protein.
  
 0.964
SCY59055.1
Hemoglobin/transferrin/lactoferrin receptor protein.
 
   
 0.933
SCY58996.1
Flavodoxin.
 
  
 0.896
SCY59028.1
Energy-coupling factor transport system permease protein.
 
     0.824
SCY59021.1
Energy-coupling factor transport system ATP-binding protein.
 
    0.746
SCX95777.1
Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
0.631
SCY59036.1
Energy-coupling factor transport system substrate-specific component.
       0.622
SCX84344.1
Metallo-beta-lactamase superfamily protein.
   
  
 0.593
SCY27598.1
Hemerythrin.
   
  
 0.591
SCY49755.1
OmpA-OmpF porin, OOP family.
  
  
 0.587
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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