STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY60535.1Microcin C transport system substrate-binding protein. (612 aa)    
Predicted Functional Partners:
SCY28823.1
Microcin C transport system permease protein.
 
 
 0.875
SCY60497.1
Microcin C transport system permease protein.
 
 
 0.875
SCX75322.1
Microcin C transport system permease protein.
 
 
 0.865
SCY28809.1
Microcin C transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.852
SCY60479.1
Microcin C transport system ATP-binding protein/oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.834
SCY28840.1
Microcin C transport system permease protein.
  
 0.828
SCY60513.1
Microcin C transport system permease protein.
  
 0.828
SCY60552.1
Zinc protease.
       0.773
SCX75330.1
Microcin C transport system permease protein.
  
 0.734
SCX97570.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.715
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.