STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY65637.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (342 aa)    
Predicted Functional Partners:
SCX96112.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.833
SCY39708.1
TRAP transporter, DctM subunit.
 
  
 0.796
SCY39692.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.793
SCX96093.1
C4-dicarboxylate transporter, DctM subunit.
 
  
 0.789
SCY58484.1
C4-dicarboxylate transporter, DctM subunit.
 
  
 0.787
SCY81293.1
TRAP transporter, DctM subunit.
 
  
 0.785
SCY32740.1
C4-dicarboxylate transporter, DctM subunit.
 
  
 0.784
SCY66656.1
C4-dicarboxylate transporter, DctM subunit.
 
  
 0.776
SCY85420.1
TRAP transporter, DctM subunit.
 
  
 0.776
SCY32772.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
     0.770
Your Current Organism:
Desulfoluna spongiiphila
NCBI taxonomy Id: 419481
Other names: D. spongiiphila, DSM 17682, Desulfoluna spongiiphila Ahn et al. 2009, strain AA1
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